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Автор Rasooly, Avraham
Автор Herold, Keith E.
Дата выпуска 2008
ISBN 978-0-85404-140-4
Формат application.pdf
Издатель Royal Society of Chemistry
Название Chapter 6. Application of DNA Microarray Technologies for Microbial Analysis
Тип other
DOI 10.1039/9781847558558-00116
Журнал Nano and Microsensors for Chemical and Biological Terrorism Surveillance
Первая страница 116
Последняя страница 165
Библиографическая ссылка E. Engvall, P. Perlman, Enzyme-linked immunosorbent assay (ELISA). Quantitative assay of immunoglobulin G, Immunochemistry, 1971, 8, 9, 871, 874
Библиографическая ссылка D. Gillespie, S. Spiegelman, A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane, J. Mol. Biol., 1965, 12, 3, 829, 842
Библиографическая ссылка J. G. Gall, M. L. Pardue, Formation and detection of RNA-DNA hybrid molecules in cytological preparations, Proc. Natl. Acad. Sci. USA, 1969, 63, 2, 378, 383
Библиографическая ссылка A. M. Ayulo, R. A. Machado, V. M. Scussel, Enterotoxigenic Escherichia coli and Staphylococcus aureus in fish and seafood from the southern region of Brazil, Int. J. Food Microbiol., 1994, 24, 1â 2, 171, 178
Библиографическая ссылка J. C. Alwine, D. J. Kemp, G. R. Stark, Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes, Proc. Natl. Acad. Sci. USA, 1977, 74, 12, 5350, 5354
Библиографическая ссылка F. C. Kafatos, C. W. Jones, A. Efstratiadis, Determination of nucleic acid sequence homologies and relative concentrations by a dot hybridization procedure, Nucleic Acids Res., 1979, 7, 6, 1541, 1552
Библиографическая ссылка R. Ekins, F. Chu, J. Micallef, High specific activity chemiluminescent and fluorescent markers: their potential application to high sensitivity and â multi-analyteâ immunoassays, J. Biolumin. Chemilumin., 1989, 4, 1, 59, 78
Библиографическая ссылка R. Ekins, F. Chu, E. Biggart, Multispot, multianalyte, immunoassay, Ann. Biol. Clin. (Paris), 1990, 48, 9, 655, 666
Библиографическая ссылка R. Ekins, F. W. Chu, Microarrays: their origins and applications, Trends Biotechnol., 1999, 17, 6, 217, 218
Библиографическая ссылка T. Degenkolbe, M. A. Hannah, S. Freund, D. K. Hincha, A. G. Heyer, K. I. Kohl, A quality-controlled microarray method for gene expression profiling, Anal. Biochem., 2005, 346, 2, 217, 224
Библиографическая ссылка K. L. Gunderson, S. Kruglyak, M. S. Graige, F. Garcia, B. G. Kermani, C. Zhao, D. Che, T. Dickinson, E. Wickham, J. Bierle, D. Doucet, M. Milewski, R. Yang, C. Siegmund, J. Haas, L. Zhou, A. Oliphant, J. B. Fan, S. Barnard, M. S. Chee, Decoding randomly ordered DNA arrays, Genome Res., 2004, 14, 5, 870, 877
Библиографическая ссылка Y. Kohara, H. Noda, K. Okano, H. Kambara, DNA hybridization using â bead-arrayâ : probe-attached beads arrayed in a capillary in a predetermined order, Nucleic Acids Res. Suppl., 2001, 1, 83, 84
Библиографическая ссылка K. Kuhn, S. C. Baker, E. Chudin, M. H. Lieu, S. Oeser, H. Bennett, P. Rigault, D. Barker, T. K. McDaniel, M. S. Chee, A novel, high-performance random array platform for quantitative gene expression profiling, Genome Res., 2004, 14, 11, 2347, 2356
Библиографическая ссылка A. Spiro, M. Lowe, D. Brown, A bead-based method for multiplexed identification and quantitation of DNA sequences using flow cytometry, Appl. Environ. Microbiol., 2000, 66, 10, 4258, 4265
Библиографическая ссылка T. M. Straub, B. P. Dockendorff, M. D. Quinonez-Diaz, C. O. Valdez, J. I. Shutthanandan, B. J. Tarasevich, J. W. Grate, C. J. Bruckner-Lea, Automated methods for multiplexed pathogen detection, J. Microbiol. Methods, 2005, 62, 3, 303, 316
Библиографическая ссылка R. C. Summerbell, C. A. Levesque, K. A. Seifert, M. Bovers, J. W. Fell, M. R. Diaz, T. Boekhout, G. S. de Hoog, J. Stalpers, P. W. Crous, Microcoding: the second step in DNA barcoding, Philos. Trans. R. Soc. Lond. B Biol. Sci., 2005, 360, 1462, 1897, 1903
Библиографическая ссылка D. Deregt, S. A. Gilbert, S. Dudas, J. Pasick, S. Baxi, K. M. Burton, M. K. Baxi, A multiplex DNA suspension microarray for simultaneous detection and differentiation of classical swine fever virus and other pestiviruses, J. Virol. Methods, 2006, 136, 1â 2, 17, 23
Библиографическая ссылка M. R. Diaz, T. Boekhout, B. Theelen, M. Bovers, F. J. Cabanes, J. W. Fell, Microcoding and flow cytometry as a high-throughput fungal identification system for Malassezia species, J. Med. Microbiol., 2006, 55, Pt 9, 1197, 1209
Библиографическая ссылка P. Porschewski, M. A. Grattinger, K. Klenzke, A. Erpenbach, M. R. Blind, F. Schafer, Using aptamers as capture reagents in bead-based assay systems for diagnostics and hit identification, J. Biomol. Screen., 2006, 11, 7, 773, 781
Библиографическая ссылка M. Schmitt, I. G. Bravo, P. J. Snijders, L. Gissmann, M. Pawlita, T. Waterboer, Bead-based multiplex genotyping of human papillomaviruses, J. Clin. Microbiol., 2006, 44, 2, 504, 512
Библиографическая ссылка L. Yang, D. K. Tran, X. Wang, BADGE, Beads Array for the Detection of Gene Expression, a high-throughput diagnostic bioassay, Genome Res., 2001, 11, 11, 1888, 1898
Библиографическая ссылка I. B. Baums, K. D. Goodwin, T. Kiesling, D. Wanless, M. R. Diaz, J. W. Fell, Luminex detection of fecal indicators in river samples, marine recreational water, and beach sand, Mar. Pollut. Bull., 2007, 54, 5, 521, 536
Библиографическая ссылка B. T. Page, C. E. Shields, W. G. Merz, C. P. Kurtzman, Rapid identification of ascomycetous yeasts from clinical specimens by a molecular method based on flow cytometry and comparison with identifications from phenotypic assays, J. Clin. Microbiol., 2006, 44, 9, 3167, 3171
Библиографическая ссылка B. T. Page, C. P. Kurtzman, Rapid identification of Candida species and other clinically important yeast species by flow cytometry, J. Clin. Microbiol., 2005, 43, 9, 4507, 4514
Библиографическая ссылка J. SantaLucia Jr., A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics, Proc. Natl. Acad. Sci. USA, 1998, 95, 4, 1460, 1465
Библиографическая ссылка N. Sugimoto, S. Nakano, M. Yoneyama, K. Honda, Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes, Nucleic Acids Res., 1996, 24, 22, 4501, 4505
Библиографическая ссылка K. J. Breslauer, R. Frank, H. Blocker, L. A. Marky, Predicting DNA duplex stability from the base sequence, Proc. Natl. Acad. Sci. USA, 1986, 83, 11, 3746, 3750
Библиографическая ссылка K. E. Herold, A. Rasooly, Oligo Design: a computer program for development of probes for oligonucleotide microarrays, Biotechniques, 2003, 35, 6, 1216, 1221
Библиографическая ссылка L. Bodrossy, A. Sessitsch, Oligonucleotide microarrays in microbial diagnostics, Curr. Opin. Microbiol., 2004, 7, 3, 245, 254
Библиографическая ссылка Z. He, L. Wu, M. W. Fields, J. Zhou, Use of microarrays with different probe sizes for monitoring gene expression, Appl. Environ. Microbiol., 2005, 71, 9, 5154, 5162
Библиографическая ссылка J. G. Hacia, Resequencing and mutational analysis using oligonucleotide microarrays, Nat. Genet., 1999, 21, 1 Suppl, 42, 47
Библиографическая ссылка J. G. Hacia, F. S. Collins, Mutational analysis using oligonucleotide microarrays, J. Med. Genet., 1999, 36, 10, 730, 736
Библиографическая ссылка J. G. Hacia, J. B. Fan, O. Ryder, L. Jin, K. Edgemon, G. Ghandour, R. A. Mayer, B. Sun, L. Hsie, C. M. Robbins, L. C. Brody, D. Wang, E. S. Lander, R. Lipshutz, S. P. Fodor, F. S. Collins, Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays, Nat. Genet., 1999, 22, 2, 164, 167
Библиографическая ссылка O. P. Kallioniemi, Biochip technologies in cancer research, Ann. Med., 2001, 33, 2, 142, 147
Библиографическая ссылка D. J. Cutler, M. E. Zwick, M. M. Carrasquillo, C. T. Yohn, K. P. Tobin, C. Kashuk, D. J. Mathews, N. A. Shah, E. E. Eichler, J. A. Warrington, A. Chakravarti, High-throughput variation detection and genotyping using microarrays, Genome Res., 2001, 11, 11, 1913, 1925
Библиографическая ссылка S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman, Basic local alignment search tool, J. Mol. Biol., 1990, 215, 3, 403, 410
Библиографическая ссылка D. L. Leiske, A. Karimpour-Fard, P. S. Hume, B. D. Fairbanks, R. T. Gill, A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray, BMC Genomics, Paper 72, 2006, 7, 1, 9
Библиографическая ссылка Z. Bozdech, J. Zhu, M. P. Joachimiak, F. E. Cohen, B. Pulliam, J. L. DeRisi, Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray, Genome Biol. Paper R9, 2003, 4, 2, 1, 15
Библиографическая ссылка M. Kuroda, T. Ohta, I. Uchiyama, T. Baba, H. Yuzawa, I. Kobayashi, L. Cui, A. Oguchi, K. Aoki, Y. Nagai, J. Lian, T. Ito, M. Kanamori, H. Matsumaru, A. Maruyama, H. Murakami, A. Hosoyama, Y. Mizutani-Ui, N. K. Takahashi, T. Sawano, R. Inoue, C. Kaito, K. Sekimizu, H. Hirakawa, S. Kuhara, S. Goto, J. Yabuzaki, M. Kanehisa, A. Yamashita, K. Oshima, K. Furuya, C. Yoshino, T. Shiba, M. Hattori, N. Ogasawara, H. Hayashi, K. Hiramatsu, Whole genome sequencing of meticillin-resistant Staphylococcus aureus, Lancet, 2001, 357, 9264, 1225, 1240
Библиографическая ссылка E. Talla, F. Tekaia, L. Brino, B. Dujon, A novel design of whole-genome microarray probes for Saccharomyces cerevisiae which minimizes cross-hybridization, BMC Genomics, 2003, 4, 1, 38
Библиографическая ссылка Y. Charbonnier, B. Gettler, P. Francois, M. Bento, A. Renzoni, P. Vaudaux, W. Schlegel, J. Schrenzel, A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus, BMC Genomics, 2005, 6, 95
Библиографическая ссылка S. Feng, E. R. Tillier, A fast and flexible approach to oligonucleotide probe design for genomes and gene families, Bioinformatics, 2007, 23, 10, 1195, 1202
Библиографическая ссылка Y. H. Rogers, P. Jiang-Baucom, Z. J. Huang, V. Bogdanov, S. Anderson, M. T. Boyce-Jacino, Immobilization of oligonucleotides onto a glass support via disulfide bonds: A method for preparation of DNA microarrays, Anal. Biochem., 1999, 266, 1, 23, 30
Библиографическая ссылка M. Beier, J. D. Hoheisel, Versatile derivatisation of solid support media for covalent bonding on DNA-microchips, Nucleic Acids Res., 1999, 27, 9, 1970, 1977
Библиографическая ссылка L. A. Chrisey, C. E. O'Ferrall, B. J. Spargo, C. S. Dulcey, J. M. Calvert, Fabrication of patterned DNA surfaces, Nucleic Acids Res., 1996, 24, 15, 3040, 3047
Библиографическая ссылка A. Csaki, R. Moller, W. Straube, J. M. Kohler, W. Fritzsche, DNA monolayer on gold substrates characterized by nanoparticle labeling and scanning force microscopy, Nucleic Acids Res., 2001, 29, 16, E81
Библиографическая ссылка B. G. Healey, R. S. Matson, D. R. Walt, Fiberoptic DNA sensor array capable of detecting point mutations, Anal. Biochem., 1997, 251, 2, 270, 279
Библиографическая ссылка F. Fixe, M. Dufva, P. Telleman, C. B. Christensen, One-step immobilization of aminated and thiolated DNA onto poly(methylmethacrylate) (PMMA) substrates, Lab Chip, 2004, 4, 3, 191, 195
Библиографическая ссылка S. A. Soper, M. Hashimoto, C. Situma, M. C. Murphy, R. L. McCarley, Y. W. Cheng, F. Barany, Fabrication of DNA microarrays onto polymer substrates using UV modification protocols with integration into microfluidic platforms for the sensing of low-abundant DNA point mutations, Methods, 2005, 37, 1, 103, 113
Библиографическая ссылка F. Xu, P. Datta, H. Wang, S. Gurung, M. Hashimoto, S. Wei, J. Goettert, R. L. McCarley, S. A. Soper, Polymer Microfluidic Chips with Integrated Waveguides for Reading Microarrays, Anal. Chem., 2007, 79, 23, 9007, 9013
Библиографическая ссылка H. Mao, H. Wang, D. Zhang, H. Mao, J. Zhao, J. Shi, Z. Cui, Study of hepatitis B virus gene mutations with enzymatic colorimetry-based DNA microarray, Clin. Biochem., 2006, 39, 1, 67, 73
Библиографическая ссылка B. A. Stillman, J. L. Tonkinson, FAST slides: a novel surface for microarrays, Biotechniques, 2000, 29, 3, 630, 635
Библиографическая ссылка R. F. Wang, S. J. Kim, L. H. Robertson, C. E. Cerniglia, Development of a membrane-array method for the detection of human intestinal bacteria in fecal samples, Mol. Cell. Probes, 2002, 16, 5, 341, 350
Библиографическая ссылка G. Wrobel, J. Schlingemann, L. Hummerich, H. Kramer, P. Lichter, M. Hahn, Optimization of high-density cDNA-microarray protocols by â design of experimentsâ , Nucleic Acids Res., 2003, 31, 12, e67
Библиографическая ссылка D. Guschin, G. Yershov, A. Zaslavsky, A. Gemmell, V. Shick, D. Proudnikov, P. Arenkov, A. Mirzabekov, Manual manufacturing of oligonucleotide, DNA, and protein microchips, Anal. Biochem., 1997, 250, 2, 203, 211
Библиографическая ссылка M. Schena, D. Shalon, R. W. Davis, P. O. Brown, Quantitative monitoring of gene expression patterns with a complementary DNA microarray, Science, 1995, 270, 5235, 467, 470
Библиографическая ссылка A. L. Lloyd, B. J. Marshall, B. J. Mee, Identifying cloned Helicobacter pylori promoters by primer extension using a FAM-labelled primer and GeneScan analysis, J. Microbiol. Methods., 2005, 60, 3, 291, 298
Библиографическая ссылка R. N. Van Gelder, M. E. von Zastrow, A. Yool, W. C. Dement, J. D. Barchas, J. H. Eberwine, Amplified RNA synthesized from limited quantities of heterogeneous cDNA, Proc. Natl. Acad. Sci. USA, 1990, 87, 5, 1663, 1667
Библиографическая ссылка N. N. Iscove, M. Barbara, M. Gu, M. Gibson, C. Modi, N. Winegarden, Representation is faithfully preserved in global cDNA amplified exponentially from sub-picogram quantities of mRNA, Nat. Biotechnol., 2002, 20, 9, 940, 943
Библиографическая ссылка J. N. Lawson, S. A. Johnston, Amplification of sense-stranded prokaryotic RNA, DNA Cell Biol., 2006, 25, 11, 627, 634
Библиографическая ссылка A. Badiee, H. G. Eiken, V. M. Steen, R. Lovlie, Evaluation of five different cDNA labeling methods for microarrays using spike controls, BMC Biotechnol., 2003, 3, 1, 23
Библиографическая ссылка S. Goswami, W. Wang, J. B. Wyckoff, J. S. Condeelis, Breast cancer cells isolated by chemotaxis from primary tumors show increased survival and resistance to chemotherapy, Cancer Res., 2004, 64, 21, 7664, 7667
Библиографическая ссылка W. Lian, S. A. Litherland, H. Badrane, W. Tan, D. Wu, H. V. Baker, P. A. Gulig, D. V. Lim, S. Jin, Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles, Anal. Biochem., 2004, 334, 1, 135, 144
Библиографическая ссылка L. A. Lyon, M. D. Musick, M. J. Natan, Colloidal Au-enhanced surface plasmon resonance immunosensing, Anal. Chem., 1998, 70, 24, 5177, 5183
Библиографическая ссылка X. Pang, D. Zhou, Y. Song, D. Pei, J. Wang, Z. Guo, R. Yang, Bacterial mRNA purification by magnetic capture-hybridization method, Microbiol. Immunol., 2004, 48, 2, 91, 96
Библиографическая ссылка F. Di Cello, Y. Xie, M. Paul-Satyaseela, K. S. Kim, Approaches to bacterial RNA isolation and purification for microarray analysis of Escherichia coli K1 interaction with human brain microvascular endothelial cells, J. Clin. Microbiol., 2005, 43, 8, 4197, 4199
Библиографическая ссылка S. Barbaux, O. Poirier, F. Cambien, Use of degenerate oligonucleotide primed PCR (DOP-PCR) for the genotyping of low-concentration DNA samples, J. Mol. Med., 2001, 79, 5â 6, 329, 332
Библиографическая ссылка J. G. Paez, M. Lin, R. Beroukhim, J. C. Lee, X. Zhao, D. J. Richter, S. Gabriel, P. Herman, H. Sasaki, D. Altshuler, C. Li, M. Meyerson, W. R. Sellers, Genome coverage and sequence fidelity of phi29 polymerase-based multiple strand displacement whole genome amplification, Nucleic Acids Res., 2004, 32, 9, e71
Библиографическая ссылка R. Luthra, L. J. Medeiros, Isothermal multiple displacement amplification: a highly reliable approach for generating unlimited high molecular weight genomic DNA from clinical specimens, J. Mol. Diagn., 2004, 6, 3, 236, 242
Библиографическая ссылка V. Gadkar, M. C. Rillig, Application of Phi29 DNA polymerase mediated whole genome amplification on single spores of arbuscular mycorrhizal (AM) fungi, FEMS Microbiol Lett., 2005, 242, 1, 65, 71
Библиографическая ссылка K. S. Barker, S. Crisp, N. Wiederhold, R. E. Lewis, B. Bareither, J. Eckstein, R. Barbuch, M. Bard, P. D. Rogers, Genome-wide expression profiling reveals genes associated with amphotericin B and fluconazole resistance in experimentally induced antifungal resistant isolates of Candida albicans, J. Antimicrob. Chemother., 2004, 54, 2, 376, 385
Библиографическая ссылка D. L. Barker, M. S. Hansen, A. F. Faruqi, D. Giannola, O. R. Irsula, R. S. Lasken, M. Latterich, V. Makarov, A. Oliphant, J. H. Pinter, R. Shen, I. Sleptsova, W. Ziehler, E. Lai, Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel, Genome Res., 2004, 14, 5, 901, 907
Библиографическая ссылка N. Sergeev, M. Distler, M. Vargas, V. Chizhikov, K. E. Herold, A. Rasooly, Microarray analysis of Bacillus cereus group virulence factors, J. Microbiol. Methods, 2006a, 65, 3, 488, 502
Библиографическая ссылка N. Sergeev, M. Distler, S. Courtney, S. F. Al-Khaldi, D. Volokhov, V. Chizhikov, A. Rasooly, Multipathogen oligonucleotide microarray for environmental and biodefense applications, Biosens. Bioelectron., 2004a, 20, 4, 684, 698
Библиографическая ссылка D. Volokhov, V. Chizhikov, K. Chumakov, A. Rasooly, Microarray analysis of erythromycin resistance determinants, J. Appl. Microbiol., 2003, 95, 4, 787, 798
Библиографическая ссылка D. Volokhov, V. Chizhikov, K. Chumakov, A. Rasooly, Microarray-based identification of thermophilic Campylobacter jejuni, C. coli, C. lari, and C. upsaliensis, J. Clin. Microbiol., 2003, 41, 9, 4071, 4080
Библиографическая ссылка S. F. Al-Khaldi, S. A. Martin, A. Rasooly, J. D. Evans, DNA microarray technology used for studying foodborne pathogens and microbial habitats: minireview, J. AOAC Int., 2002, 85, 4, 906, 910
Библиографическая ссылка V. Chizhikov, A. Rasooly, K. Chumakov, D. D. Levy, Microarray analysis of microbial virulence factors, Appl. Environ. Microbiol., 2001, 67, 7, 3258, 3263
Библиографическая ссылка S. F. Al-Khaldi, D. Villanueva, V. Chizhikov, Identification and characterization of Clostridium perfringens using single target DNA microarray chip, Int. J. Food Microbiol., 2004, 91, 3, 289, 296
Библиографическая ссылка D. Volokhov, A. Pomerantsev, V. Kivovich, A. Rasooly, V. Chizhikov, Identification of Bacillus anthracis by multiprobe microarray hybridization, Diagn. Microbiol. Infect. Dis., 2004, 49, 3, 163, 171
Библиографическая ссылка J. Johnson, K. Jinneman, G. Stelma, B. G. Smith, D. Lye, J. Messer, J. Ulaszek, L. Evsen, S. Gendel, R. W. Bennett, B. Swaminathan, J. Pruckler, A. Steigerwalt, S. Kathariou, S. Yildirim, D. Volokhov, A. Rasooly, V. Chizhikov, M. Wiedmann, E. Fortes, R. E. Duvall, A. D. Hitchins, Natural atypical Listeria innocua strains with Listeria monocytogenes pathogenicity island 1 genes, Appl. Environ. Microbiol., 2004, 70, 7, 4256, 4266
Библиографическая ссылка D. Volokhov, A. Rasooly, K. Chumakov, V. Chizhikov, Identification of Listeria species by microarray-based assay, J. Clin. Microbiol., 2002, 40, 12, 4720, 4728
Библиографическая ссылка X. Tang, S. L. Morris, J. J. Langone, L. E. Bockstahler, Microarray and allele specific PCR detection of point mutations in Mycobacterium tuberculosis genes associated with drug resistance, J. Microbiol. Methods, 2005, 63, 3, 318, 330
Библиографическая ссылка B. A. Stillman, J. L. Tonkinson, Expression microarray hybridization kinetics depend on length of the immobilized DNA but are independent of immobilization substrate, Anal. Biochem., 2001, 295, 2, 149, 157
Библиографическая ссылка D. S. Dandy, P. Wu, D. W. Grainger, Array feature size influences nucleic acid surface capture in DNA microarrays, Proc. Natl. Acad. Sci. USA, 2007, 104, 20, 8223, 8228
Библиографическая ссылка Y. Sun, K. B. Jacobson, V. Golovlev, Label-free detection of biomolecules on microarrays using surface-colloid interaction, Anal. Biochem., 2007, 361, 2, 244, 252
Библиографическая ссылка H. S. Lai, Y. Chen, W. H. Lin, C. N. Chen, H. C. Wu, C. J. Chang, P. H. Lee, K. J. Chang, W. J. Chen, Quantitative gene expression analysis by cDNA microarray during liver regeneration after partial hepatectomy in rats, Surg. Today, 2005, 35, 5, 396, 403
Библиографическая ссылка J. Petersen, M. Stangegaard, H. Birgens, M. Dufva, Detection of mutations in the beta-globin gene by colorimetric staining of DNA microarrays visualized by a flatbed scanner, Anal. Biochem., 2007, 360, 1, 169, 171
Библиографическая ссылка S. Raychaudhuri, P. D. Sutphin, J. T. Chang, R. B. Altman, Basic microarray analysis: grouping and feature reduction, Trends Biotechnol., 2001, 19, 5, 189, 193
Библиографическая ссылка A. K. Jarvinen, S. Hautaniemi, H. Edgren, P. Auvinen, J. Saarela, O. P. Kallioniemi, O. Monni, Are data from different gene expression microarray platforms comparable?, Genomics, 2004, 83, 6, 1164, 1168
Библиографическая ссылка C. L. Yauk, M. L. Berndt, A. Williams, G. R. Douglas, Comprehensive comparison of six microarray technologies, Nucleic Acids Res., 2004, 32, 15, e124
Библиографическая ссылка Z. P. Aguilar, W. R. Vandaveer, I. Fritsch, Self-contained microelectrochemical immunoassay for small volumes using mouse IgG as a model system, Analytical Chemistry, 2002, 74, 14, 3321, 3329
Библиографическая ссылка N. Sergeev, D. Volokhov, V. Chizhikov, A. Rasooly, Simultaneous analysis of multiple staphylococcal enterotoxin genes by an oligonucleotide microarray assay, J. Clin. Microbiol., 2004b, 42, 5, 2134, 2143
Библиографическая ссылка R. S. Gupta, E. Griffiths, Critical issues in bacterial phylogeny, Theor. Popul. Biol., 2002, 61, 4, 423, 434
Библиографическая ссылка R. S. Gupta, The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes, Crit. Rev. Microbiol., 2004, 30, 2, 123, 143
Библиографическая ссылка S. Karlin, L. Brocchieri, Heat shock protein 70 family: multiple sequence comparisons, function, and evolution, J. Mol. Evol., 1998, 47, 5, 565, 577
Библиографическая ссылка R. S. Gupta, V. Johari, Signature sequences in diverse proteins provide evidence of a close evolutionary relationship between the Deinococcus-thermus group and cyanobacteria, J. Mol. Evol., 1998, 46, 6, 716, 720
Библиографическая ссылка G. J. Olsen, D. J. Lane, S. J. Giovannoni, N. R. Pace, D. A. Stahl, Microbial ecology and evolution: a ribosomal RNA approach, Annu. Rev. Microbiol., 1986, 40, 337, 365
Библиографическая ссылка W. Ludwig, K. H. Schleifer, Bacterial phylogeny based on 16S and 23S rRNA sequence analysis, FEMS Microbiol. Rev., 1994, 15, 2â 3, 155, 173
Библиографическая ссылка R. M. Anthony, T. J. Brown, G. L. French, Rapid diagnosis of bacteremia by universal amplification of 23S ribosomal DNA followed by hybridization to an oligonucleotide array, J. Clin. Microbiol., 2000, 38, 2, 781, 788
Библиографическая ссылка K. Kakinuma, M. Fukushima, R. Kawaguchi, Detection and identification of Escherichia coli, Shigella, and Salmonella by microarrays using the gyrB gene, Biotechnol. Bioeng., 2003, 83, 6, 721, 728
Библиографическая ссылка K. H. Wilson, W. J. Wilson, J. L. Radosevich, T. Z. DeSantis, V. S. Viswanathan, T. A. Kuczmarski, G. L. Andersen, High-density microarray of small-subunit ribosomal DNA probes, Appl. Environ. Microbiol., 2002a, 68, 5, 2535, 2541
Библиографическая ссылка W. J. Wilson, C. L. Strout, T. Z. DeSantis, J. L. Stilwell, A. V. Carrano, G. L. Andersen, Sequence-specific identification of 18 pathogenic microorganisms using microarray technology, Mol. Cell Probes, 2002b, 16, 2, 119, 127
Библиографическая ссылка G. Mitterer, M. Huber, E. Leidinger, C. Kirisits, W. Lubitz, M. W. Mueller, W. M. Schmidt, Microarray-based identification of bacteria in clinical samples by solid-phase PCR amplification of 23S ribosomal DNA sequences, J. Clin. Microbiol., 2004, 42, 3, 1048, 1057
Библиографическая ссылка U. Nubel, P. M. Schmidt, E. Reiss, F. Bier, W. Beyer, D. Naumann, Oligonucleotide microarray for identification of Bacillus anthracis based on intergenic transcribed spacers in ribosomal DNA, FEMS Microbiol. Lett., 2004, 240, 2, 215, 223
Библиографическая ссылка G. Keramas, D. D. Bang, M. Lund, M. Madsen, S. E. Rasmussen, H. Bunkenborg, P. Telleman, C. B. Christensen, Development of a sensitive DNA microarray suitable for rapid detection of Campylobacter spp, Mol. Cell Probes, 2003, 17, 4, 187, 196
Библиографическая ссылка A. Loy, C. Schulz, S. Lucker, A. Schopfer-Wendels, K. Stoecker, C. Baranyi, A. Lehner, M. Wagner, 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order â Rhodocyclalesâ , Appl. Environ. Microbiol., 2005, 71, 3, 1373, 1386
Библиографическая ссылка N. Sergeev, D. Volokhov, V. Chizhikov, A. Rasooly, Simultaneous analysis of multiple staphylococcal enterotoxin genes by an oligonucleotide microarray assay, J. Clin. Microbiol., 2004, 42, 5, 2134, 2143
Библиографическая ссылка S. F. Al-Khaldi, K. M. Myers, A. Rasooly, V. Chizhikov, Genotyping of Clostridium perfringens toxins using multiple oligonucleotide microarray hybridization, Mol. Cell Probes, 2004, 18, 6, 359, 367
Библиографическая ссылка C. F. Wu, J. J. Valdes, W. E. Bentley, J. W. Sekowski, DNA microarray for discrimination between pathogenic 0157:H7 EDL933 and non-pathogenic Escherichia coli strains, Biosens. Bioelectron., 2003, 19, 1, 1, 8
Библиографическая ссылка D. Y. Lee, K. Shannon, L. A. Beaudette, Detection of bacterial pathogens in municipal wastewater using an oligonucleotide microarray and real-time quantitative PCR, J. Microbiol. Methods, 2006, 65, 3, 453, 467
Библиографическая ссылка K. Lemarchand, F. Berthiaume, C. Maynard, J. Harel, P. Payment, P. Bayardelle, L. Masson, R. Brousseau, Optimization of microbial DNA extraction and purification from raw wastewater samples for downstream pathogen detection by microarrays, J. Microbiol. Methods, 2005, 63, 2, 115, 126
Библиографическая ссылка F. Poly, D. Threadgill, A. Stintzi, Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons, J. Bacteriol., 2004, 186, 14, 4781, 4795
Библиографическая ссылка D. P. Chandler, O. Alferov, B. Chernov, D. S. Daly, J. Golova, A. Perov, M. Protic, R. Robison, M. Schipma, A. White, A. Willse, Diagnostic oligonucleotide microarray fingerprinting of Bacillus isolates, J. Clin. Microbiol., 2006, 44, 1, 244, 250
Библиографическая ссылка Y. Liu-Stratton, S. Roy, C. K. Sen, DNA microarray technology in nutraceutical and food safety, Toxicol. Lett., 2004, 150, 1, 29, 42
Библиографическая ссылка D. R. Call, F. J. Brockman, D. P. Chandler, Detecting and genotyping Escherichia coli O157:H7 using multiplexed PCR and nucleic acid microarrays, Int. J. Food Microbiol., 2001, 67, 1â 2, 71, 80
Библиографическая ссылка M. Fukushima, K. Kakinuma, H. Hayashi, H. Nagai, K. Ito, R. Kawaguchi, Detection and identification of Mycobacterium species isolates by DNA microarray, J. Clin. Microbiol., 2003, 41, 6, 2605, 2615
Библиографическая ссылка S. F. Gonzalez, M. J. Krug, M. E. Nielsen, Y. Santos, D. R. Call, Simultaneous detection of marine fish pathogens by using multiplex PCR and a DNA microarray, J. Clin. Microbiol., 2004, 42, 4, 1414, 1419
Библиографическая ссылка T. Kostic, A. Weilharter, S. Rubino, G. Delogu, S. Uzzau, K. Rudi, A. Sessitsch, L. Bodrossy, A microbial diagnostic microarray technique for the sensitive detection and identification of pathogenic bacteria in a background of nonpathogens, Anal. Biochem., 2007, 360, 2, 244, 254
Библиографическая ссылка M. E. Zwick, F. McAfee, D. J. Cutler, T. D. Read, J. Ravel, G. R. Bowman, D. R. Galloway, A. Mateczun, Microarray-based resequencing of multiple Bacillus anthracis isolates, Genome Biol. Paper R10, 2005, 6, 1, 1, 13
Библиографическая ссылка S. K. Rhee, X. Liu, L. Wu, S. C. Chong, X. Wan, J. Zhou, Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays, Appl. Environ. Microbiol., 2004, 70, 7, 4303, 4317
Библиографическая ссылка L. Wu, D. K. Thompson, G. Li, R. A. Hurt, J. M. Tiedje, J. Zhou, Development and evaluation of functional gene arrays for detection of selected genes in the environment, Appl. Environ. Microbiol., 2001, 67, 12, 5780, 5790
Библиографическая ссылка L. Wu, D. K. Thompson, X. Liu, M. W. Fields, C. E. Bagwell, J. M. Tiedje, J. Zhou, Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications, Environ. Sci. Technol., 2004, 38, 24, 6775, 6782
Библиографическая ссылка K. J. Indest, K. Betts, J. S. Furey, Application of oligonucleotide microarrays for bacterial source tracking of environmental Enterococcus sp. isolates, Int. J. Environ. Res. Public Health, 2005, 2, 1, 175, 185
Библиографическая ссылка T. Yokoi, Y. Kaku, H. Suzuki, M. Ohta, H. Ikuta, K. Isaka, T. Sumino, M. Wagatsuma, â FloraArrayâ for screening of specific DNA probes representing the characteristics of a certain microbial community, FEMS Microbiol. Lett., 2007, 273, 2, 166, 171
Библиографическая ссылка C. Palmer, E. M. Bik, M. B. Eisen, P. B. Eckburg, T. R. Sana, P. K. Wolber, D. A. Relman, P. O. Brown, Rapid quantitative profiling of complex microbial populations, Nucleic Acids Res. Paper e5, 2006, 34, 1, 1, 10
Библиографическая ссылка A. Loy, A. Lehner, N. Lee, J. Adamczyk, H. Meier, J. Ernst, K. H. Schleifer, M. Wagner, Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment, Appl. Environ. Microbiol., 2002, 68, 10, 5064, 5081
Библиографическая ссылка I. H. Franke-Whittle, S. H. Klammer, H. Insam, Design and application of an oligonucleotide microarray for the investigation of compost microbial communities, J. Microbiol. Methods, 2005, 62, 1, 37, 56
Библиографическая ссылка J. D. Neufeld, W. W. Mohn, V. de Lorenzo, Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray, Environ. Microbiol., 2006, 8, 1, 126, 140
Библиографическая ссылка J. Peplies, C. Lachmund, F. O. Glockner, W. Manz, A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities, Appl. Environ. Microbiol., 2006, 72, 7, 4829, 4838
Библиографическая ссылка E. L. Brodie, T. Z. Desantis, D. C. Joyner, S. M. Baek, J. T. Larsen, G. L. Andersen, T. C. Hazen, P. M. Richardson, D. J. Herman, T. K. Tokunaga, J. M. Wan, M. K. Firestone, Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation, Appl. Environ. Microbiol., 2006, 72, 9, 6288, 6298
Библиографическая ссылка H. Yin, L. Cao, G. Qiu, D. Wang, L. Kellogg, J. Zhou, Z. Dai, X. Liu, Development and evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in Acid Mine Drainages and bioleaching systems, J. Microbiol. Methods, 2007, 70, 1, 165, 178
Библиографическая ссылка J. D. Van Nostrand, T. V. Khijniak, T. J. Gentry, M. T. Novak, A. G. Sowder, J. Z. Zhou, P. M. Bertsch, P. J. Morris, Isolation and characterization of four gram-positive nickel-tolerant microorganisms from contaminated sediments, Microbiol. Ecol., 2007, 53, 4, 670, 682
Библиографическая ссылка E. L. Brodie, T. Z. DeSantis, J. P. Parker, I. X. Zubietta, Y. M. Piceno, G. L. Andersen, Urban aerosols harbor diverse and dynamic bacterial populations, Proc. Natl. Acad. Sci. USA, 2007, 104, 1, 299, 304
Библиографическая ссылка S. El Fantroussi, H. Urakawa, A. E. Bernhard, J. J. Kelly, P. A. Noble, H. Smidt, G. M. Yershov, D. A. Stahl, Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays, Appl. Environ. Microbiol., 2003, 69, 4, 2377, 2382
Библиографическая ссылка L. Wu, X. Liu, C. W. Schadt, J. Zhou, Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification, Appl. Environ. Microbiol., 2006, 72, 7, 4931, 4941
Библиографическая ссылка B. Strommenger, C. Schmidt, G. Werner, B. Roessle-Lorch, T. T. Bachmann, W. Witte, DNA microarray for the detection of therapeutically relevant antibiotic resistance determinants in clinical isolates of Staphylococcus aureus, Mol. Cell Probes, 2007, 21, 3, 161, 170
Библиографическая ссылка D. R. Call, M. K. Bakko, M. J. Krug, M. C. Roberts, Identifying antimicrobial resistance genes with DNA microarrays, Antimicrob. Agents Chemother., 2003, 47, 10, 3290, 3295
Библиографическая ссылка S. Chen, S. Zhao, P. F. McDermott, C. M. Schroeder, D. G. White, J. Meng, A DNA microarray for identification of virulence and antimicrobial resistance genes in Salmonella serovars and Escherichia coli, Mol. Cell Probes, 2005, 19, 3, 195, 201
Библиографическая ссылка V. Grimm, S. Ezaki, M. Susa, C. Knabbe, R. D. Schmid, T. T. Bachmann, Use of DNA microarrays for rapid genotyping of TEM beta-lactamases that confer resistance, J. Clin. Microbiol., 2004, 42, 8, 3766, 3774
Библиографическая ссылка M. S. Ammor, A. B. Florez, A. H. van Hoek, C. G. de Los Reyes-Gavilan, H. J. Aarts, A. Margolles, B. Mayo, Molecular characterization of intrinsic and acquired antibiotic resistance in lactic Acid bacteria and bifidobacteria, J. Mol. Microbiol. Biotechnol., 2008, 14, 1â 3, 6, 15
Библиографическая ссылка V. Perreten, L. Vorlet-Fawer, P. Slickers, R. Ehricht, P. Kuhnert, J. Frey, Microarray-based detection of 90 antibiotic resistance genes of gram-positive bacteria, J. Clin. Microbiol., 2005, 43, 5, 2291, 2302
Библиографическая ссылка J. C. Caoili, A. Mayorova, D. Sikes, L. Hickman, B. B. Plikaytis, T. M. Shinnick, Evaluation of the TB-Biochip oligonucleotide microarray system for rapid detection of rifampin resistance in Mycobacterium tuberculosis, J. Clin. Microbiol., 2006, 44, 7, 2378, 2381
Библиографическая ссылка M. M. Wade, D. Volokhov, M. Peredelchuk, V. Chizhikov, Y. Zhang, Accurate mapping of mutations of pyrazinamide-resistant Mycobacterium tuberculosis strains with a scanning-frame oligonucleotide microarray, Diagn. Microbiol. Infect. Dis., 2004, 49, 2, 89, 97
Библиографическая ссылка K. J. Cheung, V. Badarinarayana, D. W. Selinger, D. Janse, G. M. Church, A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli, Genome Res., 2003, 13, 2, 206, 215
Библиографическая ссылка E. Mongodin, J. Finan, M. W. Climo, A. Rosato, S. Gill, G. L. Archer, Microarray transcription analysis of clinical Staphylococcus aureus isolates resistant to vancomycin, J. Bacteriol., 2003, 185, 15, 4638, 4643
Библиографическая ссылка J. Qiu, D. Zhou, L. Qin, Y. Han, X. Wang, Z. Du, Y. Song, R. Yang, Microarray expression profiling of Yersinia pestis in response to chloramphenicol, FEMS Microbiol. Lett., 2006, 263, 1, 26, 31
Библиографическая ссылка J. Qiu, D. Zhou, Y. Han, L. Zhang, Z. Tong, Y. Song, E. Dai, B. Li, J. Wang, Z. Guo, J. Zhai, Z. Du, X. Wang, R. Yang, Global gene expression profile of Yersinia pestis induced by streptomycin, FEMS Microbiol. Lett., 2005, 243, 2, 489, 496
Библиографическая ссылка P. D. Rogers, K. S. Barker, Evaluation of differential gene expression in fluconazole-susceptible and -resistant isolates of Candida albicans by cDNA microarray analysis, Antimicrob. Agents Chemother., 2002, 46, 11, 3412, 3417
Библиографическая ссылка S. Kastner, V. Perreten, H. Bleuler, G. Hugenschmidt, C. Lacroix, L. Meile, Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food, Syst. Appl. Microbiol., 2006, 29, 2, 145, 155
Библиографическая ссылка M. Ma, H. Wang, Y. Yu, D. Zhang, S. Liu, Detection of antimicrobial resistance genes of pathogenic Salmonella from swine with DNA microarray, J. Vet. Diagn. Invest., 2007, 19, 2, 161, 167

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