The genome of the model beetle and pest Tribolium castaneum
Richards, Stephen; Gibbs, Richard A.; Weinstock, George M.; Brown, Susan J.; Denell, Robin; Beeman, Richard W.; Gibbs, Richard; Beeman, Richard W.; Brown, Susan J.; Bucher, Gregor; Friedrich, Markus; Grimmelikhuijzen, Cornelis J. P.; Klingler, Martin; Lorenzen, Marce; Richards, Stephen; Roth, Siegfried; Schröder, Reinhard; Tautz, Diethard; Zdobnov, Evgeny M.; Muzny, Donna; Gibbs, Richard A.; Weinstock, George M.; Attaway, Tony; Bell, Stephanie; Buhay, Christian J.; Chandrabose, Mimi N.; Chavez, Dean; Clerk-Blankenburg, Kerstin P.; Cree, Andrew; Dao, Marvin; Davis, Clay; Chacko, Joseph; Dinh, Huyen; Dugan-Rocha, Shannon; Fowler, Gerald; Garner, Toni T.; Garnes, Jeffrey; Gnirke, Andreas; Hawes, Alica; Hernandez, Judith; Hines, Sandra; Holder, Michael; Hume, Jennifer; Jhangiani, Shalini N.; Joshi, Vandita; Khan, Ziad Mohid; Jackson, LaRonda; Kovar, Christie; Kowis, Andrea; Lee, Sandra; Lewis, Lora R.; Margolis, Jon; Morgan, Margaret; Nazareth, Lynne V.; Nguyen, Ngoc; Okwuonu, Geoffrey; Parker, David; Richards, Stephen; Ruiz, San-Juana; Santibanez, Jireh; Savard, Joël; Scherer, Steven E.; Schneider, Brian; Sodergren, Erica; Tautz, Diethard; Vattahil, Selina; Villasana, Donna; White, Courtney S.; Wright, Rita; Park, Yoonseong; Beeman, Richard W.; Lord, Jeff; Oppert, Brenda; Lorenzen, Marce; Brown, Susan; Wang, Liangjiang; Savard, Joël; Tautz, Diethard; Richards, Stephen; Weinstock, George; Gibbs, Richard A.; Liu, Yue; Worley, Kim; Weinstock, George; Elsik, Christine G.; Reese, Justin T.; Elhaik, Eran; Landan, Giddy; Graur, Dan; Arensburger, Peter; Atkinson, Peter; Beeman, Richard W.; Beidler, Jim; Brown, Susan J.; Demuth, Jeffery P.; Drury, Douglas W.; Du, Yu-Zhou; Fujiwara, Haruhiko; Lorenzen, Marce; Maselli, Vincenza; Osanai, Mizuko; Park, Yoonseong; Robertson, Hugh M.; Tu, Zhijian; Wang, Jian-jun; Wang, Suzhi; Richards, Stephen; Song, Henry; Zhang, Lan; Sodergren, Erica; Werner, Doreen; Stanke, Mario; Morgenstern, Burkhard; Solovyev, Victor; Kosarev, Peter; Brown, Garth; Chen, Hsiu-Chuan; Ermolaeva, Olga; Hlavina, Wratko; Kapustin, Yuri; Kiryutin, Boris; Kitts, Paul; Maglott, Donna; Pruitt, Kim; Sapojnikov, Victor; Souvorov, Alexandre; Mackey, Aaron J.; Waterhouse, Robert M.; Wyder, Stefan; Zdobnov, Evgeny M.; Zdobnov, Evgeny M.; Wyder, Stefan; Kriventseva, Evgenia V.; Kadowaki, Tatsuhiko; Bork, Peer; Aranda, Manuel; Bao, Riyue; Beermann, Anke; Berns, Nicola; Bolognesi, Renata; Bonneton, François; Bopp, Daniel; Brown, Susan J.; Bucher, Gregor; Butts, Thomas; Chaumot, Arnaud; Denell, Robin E.; Ferrier, David E. K.; Friedrich, Markus; Gordon, Cassondra M.; Jindra, Marek; Klingler, Martin; Lan, Que; Lattorff, H. Michael G.; Laudet, Vincent; von Levetsow, Cornelia; Liu, Zhenyi; Lutz, Rebekka; Lynch, Jeremy A.; da Fonseca, Rodrigo Nunes; Posnien, Nico; Reuter, Rolf; Roth, Siegfried; Savard, Joël; Schinko, Johannes B.; Schmitt, Christian; Schoppmeier, Michael; Schröder, Reinhard; Shippy, Teresa D.; Simonnet, Franck; Marques-Souza, Henrique; Tautz, Diethard; Tomoyasu, Yoshinori; Trauner, Jochen; Van der Zee, Maurijn; Vervoort, Michel; Wittkopp, Nadine; Wimmer, Ernst A.; Yang, Xiaoyun; Jones, Andrew K.; Sattelle, David B.; Ebert, Paul R.; Nelson, David; Scott, Jeffrey G.; Beeman, Richard W.; Muthukrishnan, Subbaratnam; Kramer, Karl J.; Arakane, Yasuyuki; Beeman, Richard W.; Zhu, Qingsong; Hogenkamp, David; Dixit, Radhika; Oppert, Brenda; Jiang, Haobo; Zou, Zhen; Marshall, Jeremy; Elpidina, Elena; Vinokurov, Konstantin; Oppert, Cris; Zou, Zhen; Evans, Jay; Lu, Zhiqiang; Zhao, Picheng; Sumathipala, Niranji; Altincicek, Boran; Vilcinskas, Andreas; Williams, Michael; Hultmark, Dan; Hetru, Charles; Jiang, Haobo; Grimmelikhuijzen, Cornelis J. P.; Hauser, Frank; Cazzamali, Giuseppe; Williamson, Michael; Park, Yoonseong; Li, Bin; Tanaka, Yoshiaki; Predel, Reinhard; Neupert, Susanne; Schachtner, Joachim; Verleyen, Peter; Raible, Florian; Bork, Peer; Friedrich, Markus; Walden, Kimberly K. O.; Robertson, Hugh M.; Angeli, Sergio; Forêt, Sylvain; Bucher, Gregor; Schuetz, Stefan; Maleszka, Ryszard; Wimmer, Ernst A.; Beeman, Richard W.; Lorenzen, Marce; Tomoyasu, Yoshinori; Miller, Sherry C.; Grossmann, Daniela; Bucher, Gregor; Tribolium Genome Sequencing Consortium; Project leader; Principal investigators; White paper; Analysis leaders; DNA sequence and global analysis: DNA sequencing; EST sequencing; genome assembly; G+C content; repetitive DNA, transposons and telomeres; gene prediction and consensus gene set; global gene content analysis; Developmental processes and signalling pathways; Pest biology, senses, Medea and RNAi: ligand gated ion channels; oxidative phosphorylation; P450 genes; chitin and cuticular proteins; digestive proteinases; immunity; neurohormones and GPCRs; neuropeptide processing enzymes; opsins; odorant receptors and gustatory receptors; odorant binding and chemosensory proteins; Medea; systemic RNAi; Zdobnov, Evgeny M.; ;; Zdobnov, Evgeny M.; ;; Zdobnov, Evgeny M.; ;
Журнал:
Nature
Дата:
2008
Аннотация:
Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cellâ cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.
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Steven; Jones, Thomas A.; Elnitski, Laura; Kolbe, Diana L.; Eswara, Pallavi; Miller, Webb; O'Connor, Michael J.; Schwartz, Scott; Gibbs, Richard A.; Muzny, Donna M.; Glusman, Gustavo; Smit, Arian; Green, Eric D.; Hardison, Ross C.; Yang, Shan; Haussler, David; Hua, Axin; Roe, Bruce A.; Kucherlapati, Raju S.; Montgomery, Kate T.; Li, Jia; Li, Ming; Lucas, Susan; Ma, Bin; McCombie, W. Richard; Morgan, Michael; Pevzner, Pavel; Tesler, Glenn; Schultz, Jörg; Smith, Douglas R.; Tromp, John; Worley, Kim C.; Lander, Eric S.; Abril, Josep F.; Agarwal, Pankaj; Alexandersson, Marina; Antonarakis, Stylianos E.; Baertsch, Robert; Berry, Eric; Birney, Ewan; Bork, Peer; Bray, Nicolas; Brent, Michael R.; Brown, Daniel G.; Butler, Jonathan; Bult, Carol; Chiaromonte, Francesca; Chinwalla, Asif T.; Church, Deanna M.; Clamp, Michele; Collins, Francis S.; Copley, Richard R.; Couronne, Olivier; Cawley, Simon; Cuff, James; Curwen, Val; Cutts, Tim; Daly, Mark; Dermitzakis, Emmanouil T.; Dewey, Colin; Dickens, Nicholas J.; Diekhans, Mark; Dubchak, Inna; Eddy, Sean R.; Elnitski, Laura; Emes, Richard D.; Eswara, Pallavi; Eyras, Eduardo; Felsenfeld, Adam; Flicek, Paul; Frankel, Wayne N.; Fulton, Lucinda A.; Furey, Terrence S.; Gnerre, Sante; Glusman, Gustavo; Goldman, Nick; Goodstadt, Leo; Green, Eric D.; Gregory, Simon; Guigó, Roderic; Hardison, Ross C.; Haussler, David; Hillier, LaDeana W.; Hinrichs, Angela; Hlavina, Wratko; Hsu, Fan; Hubbard, Tim; Jaffe, David B.; Kamal, Michael; Karolchik, Donna; Karlsson, Elinor K.; Kasprzyk, Arkadiusz; Keibler, Evan; Kent, W. James; Kirby, Andrew; Kolbe, Diana L.; Korf, Ian; Kulbokas, Edward J.; Kulp, David; Lander, Eric S.; Letunic, Ivica; Li, Ming; Lindblad-Toh, Kerstin; Ma, Bin; Maglott, Donna R.; Mauceli, Evan; Mesirov, Jill P.; Miller, Webb; Mott, Richard; Mullikin, James C.; Ning, Zemin; Pachter, Lior; Parra, GenÃs; Pevzner, Pavel; Poliakov, Alex; Ponting, Chris P.; Potter, Simon; Reymond, Alexandre; Roskin, Krishna M.; Sapojnikov, Victor; Schultz, Jörg; Schwartz, Matthias S.; Schwartz, Scott; Searle, Steve; Singer, Jonathan B.; Slater, Guy; Smit, Arian; Stabenau, Arne; Sugnet, Charles; Suyama, Mikita; Tesler, Glenn; Torrents, David; Tromp, John; Ucla, Catherine; Vinson, Jade P.; Wade, Claire M.; Weber, Ryan J.; Wheeler, Raymond; Winter, Eitan; Yang, Shiaw-Pyng; Zdobnov, Evgeny M.; Waterston, Robert H.; Whelan, Simon; Worley, Kim C.; Zody, Michael C.; Mouse Genome Sequencing Consortium; Genome Sequencing Center:; Whitehead Institute/MIT Center for Genome Research:; European Bioinformatics Institute:; Wellcome Trust Sanger Institute; Research Group in Biomedical Informatics; Bioinformatics; National Center for Biotechnology Information; Department of Mathematics; Division of Medical Genetics; Center for Biomolecular Science and Engineering; EMBL; UK MRC Mouse Sequencing Consortium; Lawrence Berkeley National Laboratory; Department of Computer Science; School of Computer Science; The Jackson Laboratory; Laboratory for Genome Exploration; Affymetrix Inc.; Departments of Statistics and Health Evaluation Sciences; National Human Genome Research Institute; Wellcome Trust Centre for Human Genetics; Department of Electrical Engineering; Department of Human Anatomy and Genetics; Department of Human Genetics; Howard Hughes Medical Institute and Department of Genetics; Departments of Biochemistry and Molecular Biology and Computer Science and Engineering; Department of Computer Science and Engineering; Baylor College of Medicine; The Institute for Systems Biology; National Human Genome Research Institute; Department of Biochemistry and Molecular Biology; Howard Hughes Medical Institute; Department of Chemistry and Biochemistry; Departments of Genetics and Medicine and Harvard-Partners Center for Genetics and Genomics; Department of Statistics; Department of Computer Science; US DOE Joint Genome Institute; Department of Computer Science; Cold Spring Harbor Laboratory; Wellcome Trust; Department of Computer Science and Engineering; Max Planck Institute for Molecular Genetics; Genome Therapeutics Corporation; Bioinformatics Solutions Inc.; Department of Molecular and Human Genetics; Department of Biology; Members of the Mouse Genome Analysis Group; Brown, Daniel G.; ;; Lander, Eric S.; ;; Lander, Eric S.; ;; Brown, Daniel G.; ;; Lander, Eric S.; ; (Macmillian Magazines Ltd., 2002)