Bell, D.; Berchuck, A.; Birrer, M.; Chien, J.; Cramer, D. W.; Dao, F.; Dhir, R.; DiSaia, P.; Gabra, H.; Glenn, P.; Godwin, A. K.; Gross, J.; Hartmann, L.; Huang, M.; Huntsman, D. G.; Iacocca, M.; Imielinski, M.; Kalloger, S.; Karlan, B. Y.; Levine, D. A.; Mills, G. B.; Morrison, C.; Mutch, D.; Olvera, N.; Orsulic, S.; Park, K.; Petrelli, N.; Rabeno, B.; Rader, J. S.; Sikic, B. I.; Smith-McCune, K.; Sood, A. K.; Bowtell, D.; Penny, R.; Testa, J. R.; Chang, K.; Dinh, H. H.; Drummond, J. A.; Fowler, G.; Gunaratne, P.; Hawes, A. C.; Kovar, C. L.; Lewis, L. R.; Morgan, M. B.; Newsham, I. F.; Santibanez, J.; Reid, J. G.; Trevino, L. R.; Wu, Y.-Q.; Wang, M.; Muzny, D. M.; Wheeler, D. A.; Gibbs, R. A.; Getz, G.; Lawrence, M. S.; Cibulskis, K.; Sivachenko, A. Y.; Sougnez, C.; Voet, D.; Wilkinson, J.; Bloom, T.; Ardlie, K.; Fennell, T.; Baldwin, J.; Gabriel, S.; Lander, E. S.; Ding, L.; Fulton, R. S.; Koboldt, D. C.; McLellan, M. D.; Wylie, T.; Walker, J.; Oâ Laughlin, M.; Dooling, D. J.; Fulton, L.; Abbott, R.; Dees, N. D.; Zhang, Q.; Kandoth, C.; Wendl, M.; Schierding, W.; Shen, D.; Harris, C. C.; Schmidt, H.; Kalicki, J.; Delehaunty, K. D.; Fronick, C. C.; Demeter, R.; Cook, L.; Wallis, J. W.; Lin, L.; Magrini, V. J.; Hodges, J. S.; Eldred, J. M.; Smith, S. M.; Pohl, C. S.; Vandin, F.; Raphael, B. J.; Weinstock, G. M.; Mardis, E. R.; Wilson, R. K.; Meyerson, M.; Winckler, W.; Getz, G.; Verhaak, R. G. W.; Carter, S. L.; Mermel, C. H.; Saksena, G.; Nguyen, H.; Onofrio, R. C.; Lawrence, M. S.; Hubbard, D.; Gupta, S.; Crenshaw, A.; Ramos, A. H.; Ardlie, K.; Chin, L.; Protopopov, A.; Zhang, Juinhua; Kim, T. M.; Perna, I.; Xiao, Y.; Zhang, H.; Ren, G.; Sathiamoorthy, N.; Park, R. W.; Lee, E.; Park, P. J.; Kucherlapati, R.; Absher, D. M.; Waite, L.; Sherlock, G.; Brooks, J. D.; Li, J. Z.; Xu, J.; Myers, R. M.; Laird, P. W.; Cope, L.; Herman, J. G.; Shen, H.; Weisenberger, D. J.; Noushmehr, H.; Pan, F.; Triche Jr, T.; Berman, B. P.; Van Den Berg, D. J.; Buckley, J.; Baylin, S. B.; Spellman, P. T.; Purdom, E.; Neuvial, P.; Bengtsson, H.; Jakkula, L. R.; Durinck, S.; Han, J.; Dorton, S.; Marr, H.; Choi, Y. G.; Wang, V.; Wang, N. J.; Ngai, J.; Conboy, J. G.; Parvin, B.; Feiler, H. S.; Speed, T. P.; Gray, J. W.; Levine, D. A.; Socci, N. D.; Liang, Y.; Taylor, B. S.; Schultz, N.; Borsu, L.; Lash, A. E.; Brennan, C.; Viale, A.; Sander, C.; Ladanyi, M.; Hoadley, K. A.; Meng, S.; Du, Y.; Shi, Y.; Li, L.; Turman, Y. J.; Zang, D.; Helms, E. B.; Balu, S.; Zhou, X.; Wu, J.; Topal, M. D.; Hayes, D. N.; Perou, C. M.; Getz, G.; Voet, D.; Saksena, G.; Zhang, Junihua; Zhang, H.; Wu, C. J.; Shukla, S.; Cibulskis, K.; Lawrence, M. S.; Sivachenko, A.; Jing, R.; Park, R. W.; Liu, Y.; Park, P. J.; Noble, M.; Chin, L.; Carter, H.; Kim, D.; Karchin, R.; Spellman, P. T.; Purdom, E.; Neuvial, P.; Bengtsson, H.; Durinck, S.; Han, J.; Korkola, J. E.; Heiser, L. M.; Cho, R. J.; Hu, Z.; Parvin, B.; Speed, T. P.; Gray, J. W.; Schultz, N.; Cerami, E.; Taylor, B. S.; Olshen, A.; Reva, B.; Antipin, Y.; Shen, R.; Mankoo, P.; Sheridan, R.; Ciriello, G.; Chang, W. K.; Bernanke, J. A.; Borsu, L.; Levine, D. A.; Ladanyi, M.; Sander, C.; Haussler, D.; Benz, C. C.; Stuart, J. M.; Benz, S. C.; Sanborn, J. Z.; Vaske, C. J.; Zhu, J.; Szeto, C.; Scott, G. K.; Yau, C.; Hoadley, K. A.; Du, Y.; Balu, S.; Hayes, D. N.; Perou, C. M.; Wilkerson, M. D.; Zhang, N.; Akbani, R.; Baggerly, K. A.; Yung, W. K.; Mills, G. B.; Weinstein, J. N.; Penny, R.; Shelton, T.; Grimm, D.; Hatfield, M.; Morris, S.; Yena, P.; Rhodes, P.; Sherman, M.; Paulauskis, J.; Millis, S.; Kahn, A.; Greene, J. M.; Sfeir, R.; Jensen, M. A.; Chen, J.; Whitmore, J.; Alonso, S.; Jordan, J.; Chu, A.; Zhang, Jinghui; Barker, A.; Compton, C.; Eley, G.; Ferguson, M.; Fielding, P.; Gerhard, D. S.; Myles, R.; Schaefer, C.; Mills Shaw, K. R.; Vaught, J.; Vockley, J. B.; Good, P. J.; Guyer, M. S.; Ozenberger, B.; Peterson, J.; Thomson, E.; The Cancer Genome Atlas Research Network; (Participants are arranged by area of contribution and then by institution.); Disease working group and tissue source sites; Genome sequencing centres: Baylor College of Medicine; Broad Institute; Washington University in St Louis; Cancer genome characterization centres: Broad Institute/Dana-Farber Cancer Institute; Harvard Medical School; HudsonAlpha Institute/Stanford University; University of Southern California/Johns Hopkins University; Lawrence Berkeley National Laboratory; Memorial Sloan-Kettering Cancer Center; University of North Carolina at Chapel Hill; Genome data analysis centres: Broad Institute; Johns Hopkins University; Lawrence Berkeley National Laboratory; Memorial Sloan-Kettering Cancer Center; University of California Santa Cruz/Buck Institute; University of North Carolina at Chapel Hill; The University of Texas MD Anderson Cancer Center; Biospecimen core resource; Data coordination centre; Project teams: National Cancer Institute; National Human Genome Research Institute; Bell, D.; Division of Anatomic Pathology, Mayo Clinic, Rochester, Minnesota 55905, USA.; Berchuck, A.; Division of Gynecologic Oncology/Department of Obstetrics and Gynecology, Duke University Medical Center, Durham, North Carolina 27708, USA.; Duke Institute for Genome Sciences and Policy, Duke University Medical Center, Durham, North Carolina 27708, USA.; Birrer, M.; Department of Medicine, Harvard Medical School, Boston, Massachusetts 02114, USA.; Gynecologic Oncology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.; Chien, J.; Division of Experimental Pathology, Mayo Clinic, Rochester, Minnesota 55905, USA.; Cramer, D. W.; Department of Obstetrics and Gynecology Epidemiology Center, Brigham and Womenâ s Hospital, Boston, Massachusetts 02115, USA.; Dao, F.; Department of Surgery, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.; Dhir, R.; Department of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania 15213, USA.; DiSaia, P.; Gynecologic Oncology Group, University of California Irvine, Irvine, California 92697, USA.; Gabra, H.; Ovarian Cancer Action Research Centre, Department of Surgery and Cancer, Imperial College London Hammersmith Campus, London W12 0NN, UK.; Glenn, P.; Department of Obstetrics, Gynecology and Reproductive Services, University of California San Francisco, San Francisco, California 94143, USA.; Godwin, A. K.; Womenâ s Cancer Program, Department of Medical Oncology, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA.; Gross, J.; Womenâ s Cancer Research Institute at the Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Geffen School of Medicine at UCLA, Los Angeles, California 90048, USA.; Hartmann, L.; Division of Medical Oncology, Mayo Clinic, Rochester, Minnesota 55905, USA.; Huang, M.; Department of Pathology, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA.; Huntsman, D. G.; Center for Translational and Applied Genomics, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 1G1, Canada.; Iacocca, M.; Department of Pathology, Christiana Care Health Services, Newark, Delaware 19718, USA.; Imielinski, M.; Gynecologic Oncology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.; Kalloger, S.; Center for Translational and Applied Genomics, British Columbia Cancer Agency, Vancouver, British Columbia V5Z 1G1, Canada.; Karlan, B. Y.; Womenâ s Cancer Research Institute at the Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Geffen School of Medicine at UCLA, Los Angeles, California 90048, USA.; Department of Obstetrics and Gynecology, Cedars-Sinai Medical Center, Geffen School of Medicine at UCLA, Los Angeles, California 90048, USA.; Levine, D. A.; Department of Surgery, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.; Mills, G. B.; Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.; Kleberg Center for Molecular Markers, The University of Texas MD Anderson Cancer Center, Houston, Texas 77030, USA.; Morrison, C.; The Department of Pathology and Laboratory Medicine, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.; Division of Molecular Pathology, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.; Mutch, D.; Department of Obstetrics and Gynecology, Division of Gynecologic Oncology, Washington University School of Medicine in St Louis, St Louis, Missouri 63110, USA.; Olvera, N.; Department of Surgery, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.; Orsulic, S.; Womenâ s Cancer Research Institute at the Samuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Geffen School of Medicine at UCLA, Los Angeles, California 90048, USA.; Park, K.; Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.; Petrelli, N.; Department of Surgery, Helen F Graham Cancer Center at Christina Care, Newark, Delaware 19713, USA.; Rabeno, B.; Department of Pathology, Christiana Care Health Services, Newark, Delaware 19718, USA.; Rader, J. S.; Department of Obstetrics and Gynecology, Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin 53226, USA.; Sikic, B. I.; Division of Oncology, Department of Medicine, Stanford University School of Medicine, Palo Alto, California 94304, USA.; Smith-McCune, K.; Department of Obstetrics, Gynecology and Reproductive Services, University of California San Francisco, San Francisco, California 94143, USA.; Sood, A. K.; Department of Gynecologic Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas 77230, USA.; Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, Houston, Texas 77230, USA.; Bowtell, D.; Research Division, Peter MacCallum Cancer Centre, Locked Bag 1, Aâ Beckett St, Melbourne, Victoria 8006, Australia.; Penny, R.; International Genomics Consortium, Phoenix, Arizona 85004, USA.; Testa, J. R.; Cancer Biology Program, Fox Chase Cancer Center, Philadelphia, Pennsylvania 19111, USA.; Chang, K.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Dinh, H. H.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Drummond, J. A.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Fowler, G.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Gunaratne, P.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Hawes, A. C.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Kovar, C. L.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Lewis, L. R.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Morgan, M. B.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Newsham, I. F.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Santibanez, J.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Reid, J. G.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Trevino, L. R.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Wu, Y.-Q.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Wang, M.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Muzny, D. M.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Wheeler, D. A.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Gibbs, R. A.; Human Genome Sequencing Center, Baylor College of Medicine, Houston, Texas 77030, USA.; Getz, G.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Lawrence, M. S.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Cibulskis, K.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Medical Sequencing Analysis and Informatics, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Sivachenko, A. Y.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Sougnez, C.; Cancer Genome & Medical Resequencing Projects, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Voet, D.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Wilkinson, J.; Sequencing Platform, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Bloom, T.; Sequencing Platform Informatics, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Ardlie, K.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Fennell, T.; Directed Sequencing Informatics, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Baldwin, J.; Sequencing Platform, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Gabriel, S.; Genetic Analysis Platform, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Lander, E. S.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142, USA.; Department of Systems Biology, Harvard University, Boston, Massachusetts 02115, USA.; Ding, L.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Fulton, R. S.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Koboldt, D. C.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; McLellan, M. D.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Wylie, T.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Walker, J.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Oâ Laughlin, M.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Dooling, D. J.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Fulton, L.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Abbott, R.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Dees, N. D.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Zhang, Q.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Kandoth, C.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Wendl, M.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Schierding, W.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Shen, D.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Harris, C. C.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Schmidt, H.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Kalicki, J.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Delehaunty, K. D.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Fronick, C. C.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Demeter, R.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Cook, L.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Wallis, J. W.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Lin, L.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Magrini, V. J.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Hodges, J. S.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Eldred, J. M.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Smith, S. M.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Pohl, C. S.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Vandin, F.; Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, Rhode Island 02912, USA.; Raphael, B. J.; Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, Rhode Island 02912, USA.; Weinstock, G. M.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Mardis, E. R.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Wilson, R. K.; The Genome Center at Washington University, Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri 63108, USA.; Meyerson, M.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA; Winckler, W.; Cancer Genome & Medical Resequencing Projects, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Getz, G.; Cancer Genome & Medical Resequencing Projects, The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Verhaak, R. G. W.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Carter, S. L.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Mermel, C. H.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Saksena, G.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Nguyen, H.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Onofrio, R. C.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Lawrence, M. S.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Hubbard, D.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA; Gupta, S.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Crenshaw, A.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Ramos, A. H.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Center for Cancer Genome Discovery, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA; Ardlie, K.; The Eli and Edythe L. Broad Institute of Massachusetts Institute of Technology and Harvard University, Cambridge, Massachusetts 02142, USA.; Chin, L.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Department of Dermatology, Harvard Medical School, Boston, Massachusetts 02115, USA.; Protopopov, A.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Zhang, Juinhua; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Kim, T. M.; The Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.; Perna, I.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Xiao, Y.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Zhang, H.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Ren, G.; Belfer Institute for Applied Cancer Science, Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.; Sathiamoorthy, N.; Partners Center for Personalized Genetic Medicine, Cambridge, Massachusetts 02139, USA.; Park, R. W.; The Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.; Lee, E.; The Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.; Park, P. J.; The Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts 02115, USA.; Informatics Program, Childrenâ s Hospital, Boston, Massachusetts 02115, USA.; Kucherlapati, R.; Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.; Absher, D. M.; HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806, USA.; Waite, L.; HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806, USA.; Sherlock, G.; Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.; Brooks, J. D.; Department of Urology, Stanford University School of Medicine, Stanford, California 94305, USA.; Li, J. Z.; Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA.; Xu, J.; Department of Human Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA.; Myers, R. M.; HudsonAlpha Institute for Biotechnology, Huntsville, Alabama 35806, USA.; Laird, P. W.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Cope, L.; Biometry and Clinical Trials Division, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, Baltimore, Maryland 21231, USA.; Herman, J. G.; Cancer Biology Division, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, Baltimore, Maryland 21231, USA.; Shen, H.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Weisenberger, D. J.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Noushmehr, H.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Pan, F.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Triche Jr, T.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Berman, B. P.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Van Den Berg, D. J.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Buckley, J.; University of Southern California Epigenome Center, University of Southern California, Los Angeles, California 90089, USA.; Baylin, S. B.; Cancer Biology Division, The Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins University, Baltimore, Maryland 21231, USA.; Spellman, P. T.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Purdom, E.; Department of Statistics, University of California at Berkeley, Berkeley, California 95720, USA.; Neuvial, P.; Department of Statistics, University of California at Berkeley, Berkeley, California 95720, USA.; Bengtsson, H.; Department of Statistics, University of California at Berkeley, Berkeley, California 95720, USA.; Jakkula, L. R.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Durinck, S.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Han, J.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Dorton, S.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Marr, H.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Choi, Y. G.; Department of Molecular and Cellular Biology, University of California at Berkeley, Berkeley, California 95720, USA.; Wang, V.; Department of Biology and Biochemistry, University of Houston, Houston, Texas 77004, USA.; Wang, N. J.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Ngai, J.; Department of Molecular and Cellular Biology, University of California at Berkeley, Berkeley, California 95720, USA.; Conboy, J. G.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Parvin, B.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Feiler, H. S.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Speed, T. P.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Walter and Eliza Hall Institute, Parkville, Victoria 3052, Australia.; Gray, J. W.; Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.; Levine, D. A.; Department of Surgery, Memorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.; Socci, N. D.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Liang, Y.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Taylor, B. S.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Schultz, N.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Borsu, L.; Department of Pathology, Human Oncology and Pathogenesis Program, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Lash, A. E.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Brennan, C.; Department of Neurosurgery, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Viale, A.; Genomics Core Laboratory, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Sander, C.; Computational Biology Center, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Ladanyi, M.; Department of Pathology, Human Oncology and Pathogenesis Program, Memorial-Sloan Kettering Cancer Center, New York, New York 10065, USA.; Hoadley, K. A.; Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599, USA.; Department of Pathology and Laboratory Medicine, Chapel Hill, North Carolina 27599, USA.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Meng, S.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Du, Y.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Shi, Y.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Li, L.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Turman, Y. J.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Zang, D.; Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina 27599, USA.; Helms, E. 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