NUCLEIC ACID RECOGNITION BY OB-FOLD PROTEINS
Theobald, Douglas L.; Mitton-Fry, Rachel M.; Wuttke, Deborah S.; Theobald, Douglas L.; Department of Chemistry and Biochemistry, University of Colorado at Boulder, Boulder, Colorado 80309-0215; email: theobal@colorado.edu fryrm@colorado.edu deborah.wuttke@colorado.edu
Журнал:
Annual Review of Biophysics and Biomolecular Structure
Дата:
2003
Аннотация:
▪ Abstract The OB-fold domain is a compact structural motif frequently used for nucleic acid recognition. Structural comparison of all OB-fold/nucleic acid complexes solved to date confirms the low degree of sequence similarity among members of this family while highlighting several structural sequence determinants common to most of these OB-folds. Loops connecting the secondary structural elements in the OB-fold core are extremely variable in length and in functional detail. However, certain features of ligand binding are conserved among OB-fold complexes, including the location of the binding surface, the polarity of the nucleic acid with respect to the OB-fold, and particular nucleic acid–protein interactions commonly used for recognition of single-stranded and unusually structured nucleic acids. Intriguingly, the observation of shared nucleic acid polarity may shed light on the longstanding question concerning OB-fold origins, indicating that it is unlikely that members of this family arose via convergent evolution.
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